SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11569304	0.88[YRI][hapmap]
rs11569329	1.00[CHB][hapmap]
rs11697349	0.82[EUR][1000 genomes]
rs11698347	0.82[EUR][1000 genomes]
rs11699100	0.82[EUR][1000 genomes]
rs12480045	1.00[CEU][hapmap]
rs12480874	1.00[CEU][hapmap]
rs16991026	0.86[MEX][hapmap]
rs16991072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap]
rs17841916	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4812988	1.00[CHD][hapmap]
rs4812989	1.00[CEU][hapmap]
rs4812996	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812999	1.00[ASN][1000 genomes]
rs4813006	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs6017736	0.80[MKK][hapmap]
rs6032636	0.88[MEX][hapmap]
rs6074044	1.00[CHB][hapmap]
rs6094252	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6104461	0.87[YRI][hapmap];0.92[AFR][1000 genomes]
rs6104462	0.92[AFR][1000 genomes]
rs6104470	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6104471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7270330	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CD40	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)