SNP Report
Basic Infomation
| Name | rs17841916 dbSNP |
|---|---|
| Location | chr:20,44744722 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485438 | 1.00[CHB][hapmap] |
| rs11086996 | 1.00[CHB][hapmap] |
| rs11569314 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11697349 | 0.82[EUR][1000 genomes] |
| rs11698347 | 0.82[EUR][1000 genomes] |
| rs11699100 | 0.82[EUR][1000 genomes] |
| rs12479764 | 0.80[AMR][1000 genomes] |
| rs12479871 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs12480045 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs12480744 | 0.80[AMR][1000 genomes] |
| rs12480874 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs12481488 | 1.00[CHB][hapmap] |
| rs16991026 | 1.00[CHB][hapmap];0.86[MEX][hapmap] |
| rs16991058 | 1.00[CHB][hapmap] |
| rs16991062 | 0.80[AMR][1000 genomes] |
| rs16991072 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap];0.80[AMR][1000 genomes] |
| rs1950174 | 1.00[CHB][hapmap] |
| rs2206892 | 1.00[CHB][hapmap] |
| rs3746520 | 1.00[CHB][hapmap] |
| rs3901163 | 0.80[AMR][1000 genomes] |
| rs4812988 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs4812989 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs4812996 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs4813006 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs6032636 | 0.88[MEX][hapmap] |
| rs6032637 | 1.00[CHB][hapmap] |
| rs6032638 | 1.00[CHB][hapmap] |
| rs6104471 | 1.00[EUR][1000 genomes] |
| rs7270330 | 0.82[EUR][1000 genomes] |
| rs8125495 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD40 | Proximal transcriptional regulation |
| CD40 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014