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rVarBase
SNP Report
Basic Infomation
Name
rs6104471  
dbSNP
Location
chr:20,44738993
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11697349
0.82[EUR][1000 genomes]
rs11698347
0.82[EUR][1000 genomes]
rs11699100
0.82[EUR][1000 genomes]
rs12479871
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17841916
1.00[EUR][1000 genomes]
rs4812996
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812999
1.00[ASN][1000 genomes]
rs4813006
0.82[EUR][1000 genomes]
rs6094252
0.92[AFR][1000 genomes]
rs6104461
0.92[AFR][1000 genomes]
rs6104462
0.92[AFR][1000 genomes]
rs6104470
0.93[AFR][1000 genomes]
rs7270330
0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CD40
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)