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rVarBase
SNP Report
Basic Infomation
Name
rs6104470  
dbSNP
Location
chr:20,44736825
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11569304
0.88[YRI][hapmap];0.91[AMR][1000 genomes]
rs11569636
1.00[GIH][hapmap]
rs11698063
1.00[CHD][hapmap]
rs12479871
0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4812996
0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6017736
0.80[MKK][hapmap]
rs6094252
1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104461
0.87[YRI][hapmap];0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6104462
0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104471
0.93[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CD40
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)