SNP Report

Basic Infomation

Name	rs6032636 dbSNP
Location	chr:20,44679008
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696804	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs12479764	0.94[AMR][1000 genomes]
rs12479871	0.88[MEX][hapmap]
rs12480008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12480045	0.94[AMR][1000 genomes]
rs12480744	0.94[AMR][1000 genomes]
rs12480874	0.94[AMR][1000 genomes]
rs12480942	0.81[EUR][1000 genomes]
rs12481093	0.88[AMR][1000 genomes]
rs12481120	0.82[AMR][1000 genomes]
rs12481488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13040272	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs16985435	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap]
rs16991024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16991026	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991062	0.94[AMR][1000 genomes]
rs16991072	1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes]
rs17841916	0.88[MEX][hapmap]
rs1805088	1.00[CHB][hapmap]
rs35804246	0.81[EUR][1000 genomes]
rs3746516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3746517	0.81[EUR][1000 genomes]
rs3746518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3746519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3746520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3848723	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3848724	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3901163	0.94[AMR][1000 genomes]
rs3933239	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs4810483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4812985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4812986	1.00[CEU][hapmap]
rs4812987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4812988	1.00[GIH][hapmap]
rs4812989	0.94[AMR][1000 genomes]
rs4812996	0.88[MEX][hapmap]
rs8113877	1.00[CHB][hapmap]
rs8114050	1.00[CHB][hapmap]
rs8123862	1.00[CHB][hapmap];0.83[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
SLC12A5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)