SNP Report
Basic Infomation
| Name | rs16991024 dbSNP |
|---|---|
| Location | chr:20,44677124 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12479764 | 0.88[AMR][1000 genomes] |
| rs12480008 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480045 | 0.88[AMR][1000 genomes] |
| rs12480744 | 0.88[AMR][1000 genomes] |
| rs12480874 | 0.88[AMR][1000 genomes] |
| rs12480942 | 0.81[EUR][1000 genomes] |
| rs12481093 | 0.82[AMR][1000 genomes] |
| rs12481488 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16991026 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16991062 | 0.88[AMR][1000 genomes] |
| rs16991072 | 0.88[AMR][1000 genomes] |
| rs35804246 | 0.81[EUR][1000 genomes] |
| rs3746516 | 0.81[EUR][1000 genomes] |
| rs3746517 | 0.81[EUR][1000 genomes] |
| rs3746518 | 0.81[EUR][1000 genomes] |
| rs3746519 | 0.81[EUR][1000 genomes] |
| rs3746520 | 0.81[EUR][1000 genomes] |
| rs3901163 | 0.88[AMR][1000 genomes] |
| rs4810483 | 0.81[EUR][1000 genomes] |
| rs4812985 | 0.81[EUR][1000 genomes] |
| rs4812987 | 0.86[EUR][1000 genomes] |
| rs4812989 | 0.88[AMR][1000 genomes] |
| rs6032636 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC12A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014