SNP Report
Name | rs4810483   dbSNP |
---|---|
Location | chr:20,44666716 |
Allele | T/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11696784 | 0.89[AMR][1000 genomes] |
rs11696804 | 1.00[CHB][hapmap] |
rs12479662 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12479823 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12479993 | 0.97[AMR][1000 genomes] |
rs12480008 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs12480597 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12480918 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12480942 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12481488 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs12481671 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs13040272 | 1.00[CHB][hapmap] |
rs16985435 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs16991024 | 0.81[EUR][1000 genomes] |
rs16991026 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs1805088 | 1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2868365 | 0.89[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs35300540 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs35804246 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746514 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs3746516 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746517 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746518 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746519 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs3848723 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs3848724 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs3918273 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs3918274 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs3933239 | 1.00[CHB][hapmap] |
rs4812984 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4812985 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4812986 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4812987 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs57489591 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs58572087 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59253654 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6032636 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs60551459 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs61088297 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs61601349 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs8113877 | 1.00[CHB][hapmap] |
rs8114050 | 1.00[CHB][hapmap] |
rs8123862 | 1.00[CHB][hapmap] |
rs9509 | 0.82[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
SLC12A5 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014