SNP Report

Basic Infomation

Name	rs8123862 dbSNP
Location	chr:20,44620873
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696767	0.95[ASN][1000 genomes]
rs11696784	0.81[ASN][1000 genomes]
rs11696804	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11697325	0.95[ASN][1000 genomes]
rs12479823	0.90[ASN][1000 genomes]
rs12479993	0.90[ASN][1000 genomes]
rs12480008	1.00[CHB][hapmap]
rs12480597	1.00[ASN][1000 genomes]
rs12481488	1.00[CHB][hapmap]
rs12481671	1.00[ASN][1000 genomes]
rs13040272	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16985435	1.00[CHB][hapmap]
rs1805088	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34109603	0.95[ASN][1000 genomes]
rs35300540	1.00[ASN][1000 genomes]
rs3746516	1.00[CHB][hapmap]
rs3746518	1.00[CHB][hapmap]
rs3746519	1.00[CHB][hapmap]
rs3746520	1.00[CHB][hapmap]
rs3848723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3848724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3918273	1.00[ASN][1000 genomes]
rs3918274	1.00[ASN][1000 genomes]
rs3933239	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs41427445	0.90[EUR][1000 genomes]
rs41504450	0.90[EUR][1000 genomes]
rs4810483	1.00[CHB][hapmap]
rs4812984	0.90[ASN][1000 genomes]
rs4812985	1.00[CHB][hapmap]
rs4812987	1.00[CHB][hapmap]
rs56242234	0.95[ASN][1000 genomes]
rs57489591	0.90[ASN][1000 genomes]
rs58421100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58507857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60053896	1.00[ASN][1000 genomes]
rs6032636	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs60551459	0.90[ASN][1000 genomes]
rs6104417	0.95[ASN][1000 genomes]
rs6104418	0.95[ASN][1000 genomes]
rs61088297	0.90[ASN][1000 genomes]
rs61393483	1.00[ASN][1000 genomes]
rs61601349	0.90[ASN][1000 genomes]
rs73911143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73911144	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73911145	0.92[AFR][1000 genomes]
rs8113877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8114050	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8120493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121146	0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TNNC2	Distal transcriptional regulation
ZNF335	Distal transcriptional regulation
MMP9	Distal transcriptional regulation
SLC12A5	Distal transcriptional regulation
ENSG00000204044	Distal transcriptional regulation
ENSG00000240742	Distal transcriptional regulation
NCOA5	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)