SNP Report
Basic Infomation
| Name | rs73911145 dbSNP |
|---|---|
| Location | chr:20,44622593 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11569656 | 1.00[AMR][1000 genomes] |
| rs16985440 | 1.00[EUR][1000 genomes] |
| rs3918245 | 1.00[EUR][1000 genomes] |
| rs3918255 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3918259 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56678929 | 1.00[EUR][1000 genomes] |
| rs58421100 | 0.92[AFR][1000 genomes] |
| rs58507857 | 0.95[AFR][1000 genomes] |
| rs59436835 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032631 | 1.00[EUR][1000 genomes] |
| rs6104419 | 1.00[EUR][1000 genomes] |
| rs6104420 | 1.00[EUR][1000 genomes] |
| rs6104421 | 1.00[EUR][1000 genomes] |
| rs61729182 | 1.00[EUR][1000 genomes] |
| rs7267183 | 1.00[AMR][1000 genomes] |
| rs73908605 | 1.00[AMR][1000 genomes] |
| rs73911143 | 0.92[AFR][1000 genomes] |
| rs73911144 | 0.85[AFR][1000 genomes] |
| rs8123862 | 0.92[AFR][1000 genomes] |
| rs8124576 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCIF1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014