SNP Report
Basic Infomation
| Name | rs3918259 dbSNP |
|---|---|
| Location | chr:20,44642510 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11569656 | 1.00[AMR][1000 genomes] |
| rs16985440 | 1.00[EUR][1000 genomes] |
| rs28525103 | 1.00[AMR][1000 genomes] |
| rs3918245 | 1.00[EUR][1000 genomes] |
| rs3918255 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56678929 | 1.00[EUR][1000 genomes] |
| rs59436835 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032631 | 1.00[EUR][1000 genomes] |
| rs6104419 | 1.00[EUR][1000 genomes] |
| rs6104420 | 1.00[EUR][1000 genomes] |
| rs6104421 | 1.00[EUR][1000 genomes] |
| rs61729182 | 1.00[EUR][1000 genomes] |
| rs7267183 | 1.00[AMR][1000 genomes] |
| rs73908605 | 1.00[AMR][1000 genomes] |
| rs73911145 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8124576 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| ENSG00000204044 | RNA binding protein mediated regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014