SNP Report
Basic Infomation
| Name | rs6104421 dbSNP |
|---|---|
| Location | chr:20,44635523 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10211842 | 0.91[AMR][1000 genomes] |
| rs13433222 | 0.91[AMR][1000 genomes] |
| rs16985440 | 1.00[EUR][1000 genomes] |
| rs3848720 | 0.91[AMR][1000 genomes] |
| rs3918245 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3918255 | 1.00[EUR][1000 genomes] |
| rs3918259 | 1.00[EUR][1000 genomes] |
| rs56678929 | 1.00[EUR][1000 genomes] |
| rs59436835 | 1.00[EUR][1000 genomes] |
| rs59568772 | 0.82[AMR][1000 genomes] |
| rs6032631 | 1.00[EUR][1000 genomes] |
| rs6104413 | 0.91[AMR][1000 genomes] |
| rs6104414 | 0.91[AMR][1000 genomes] |
| rs6104416 | 0.87[YRI][hapmap];0.91[AMR][1000 genomes] |
| rs6104419 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6104420 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61729182 | 1.00[EUR][1000 genomes] |
| rs73295253 | 0.91[AMR][1000 genomes] |
| rs73295268 | 0.91[AMR][1000 genomes] |
| rs73911145 | 1.00[EUR][1000 genomes] |
| rs8124576 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Proximal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014