SNP Report
Basic Infomation
| Name | rs6104416 dbSNP |
|---|---|
| Location | chr:20,44628514 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10211842 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11086991 | 0.83[AMR][1000 genomes] |
| rs11086993 | 0.83[AMR][1000 genomes] |
| rs13433222 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3848720 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3918245 | 1.00[GIH][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes] |
| rs3918260 | 0.83[AMR][1000 genomes] |
| rs3918265 | 0.83[AMR][1000 genomes] |
| rs3918266 | 0.83[AMR][1000 genomes] |
| rs59568772 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs6094240 | 0.83[AMR][1000 genomes] |
| rs6104412 | 0.80[AMR][1000 genomes] |
| rs6104413 | 0.87[ASW][hapmap];0.90[LWK][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104414 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6104419 | 0.82[YRI][hapmap];0.91[AMR][1000 genomes] |
| rs6104420 | 0.84[YRI][hapmap];0.91[AMR][1000 genomes] |
| rs6104421 | 0.87[YRI][hapmap];0.91[AMR][1000 genomes] |
| rs6104433 | 0.83[AMR][1000 genomes] |
| rs6104434 | 0.83[AMR][1000 genomes] |
| rs6104441 | 0.83[AMR][1000 genomes] |
| rs7272980 | 0.83[AMR][1000 genomes] |
| rs73295253 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73295268 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014