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rVarBase
SNP Report
Basic Infomation
Name
rs56678929  
dbSNP
Location
chr:20,44804570
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs16985440
1.00[EUR][1000 genomes]
rs3918245
1.00[EUR][1000 genomes]
rs3918255
1.00[EUR][1000 genomes]
rs3918259
1.00[EUR][1000 genomes]
rs57475044
0.84[AFR][1000 genomes]
rs58367300
0.90[AFR][1000 genomes]
rs59436835
1.00[EUR][1000 genomes]
rs6032631
1.00[EUR][1000 genomes]
rs6104419
1.00[EUR][1000 genomes]
rs6104420
1.00[EUR][1000 genomes]
rs6104421
1.00[EUR][1000 genomes]
rs73911145
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000229957
Proximal transcriptional regulation
CDH22
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)