SNP Report
Basic Infomation
| Name | rs57489591 dbSNP |
|---|---|
| Location | chr:20,44655417 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 65)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.86[ASN][1000 genomes] |
| rs11696784 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11696804 | 0.86[ASN][1000 genomes] |
| rs11697325 | 0.86[ASN][1000 genomes] |
| rs12479662 | 0.97[AMR][1000 genomes] |
| rs12479764 | 1.00[AFR][1000 genomes] |
| rs12479823 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12479993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480008 | 1.00[AFR][1000 genomes] |
| rs12480045 | 1.00[AFR][1000 genomes] |
| rs12480597 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12480744 | 1.00[AFR][1000 genomes] |
| rs12480874 | 1.00[AFR][1000 genomes] |
| rs12480918 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12480942 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12481093 | 1.00[AFR][1000 genomes] |
| rs12481120 | 1.00[AFR][1000 genomes] |
| rs12481671 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13040272 | 0.86[ASN][1000 genomes] |
| rs16985435 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16991026 | 1.00[AFR][1000 genomes] |
| rs16991062 | 1.00[AFR][1000 genomes] |
| rs16991072 | 1.00[AFR][1000 genomes] |
| rs1805088 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2868365 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34109603 | 0.86[ASN][1000 genomes] |
| rs35300540 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35804246 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3746514 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3746516 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3746517 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3746518 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3746519 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3746520 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3848723 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3848724 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3901163 | 1.00[AFR][1000 genomes] |
| rs3918273 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3918274 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3933239 | 0.81[ASN][1000 genomes] |
| rs4810483 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4812984 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4812985 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4812986 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4812989 | 1.00[AFR][1000 genomes] |
| rs56242234 | 0.86[ASN][1000 genomes] |
| rs58421100 | 0.90[ASN][1000 genomes] |
| rs58507857 | 0.90[ASN][1000 genomes] |
| rs58572087 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs59253654 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs60053896 | 0.90[ASN][1000 genomes] |
| rs60551459 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104417 | 0.86[ASN][1000 genomes] |
| rs6104418 | 0.86[ASN][1000 genomes] |
| rs61088297 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61393483 | 0.90[ASN][1000 genomes] |
| rs61601349 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73911143 | 0.90[ASN][1000 genomes] |
| rs73911144 | 0.90[ASN][1000 genomes] |
| rs8113877 | 0.86[ASN][1000 genomes] |
| rs8114050 | 0.81[ASN][1000 genomes] |
| rs8120493 | 0.90[ASN][1000 genomes] |
| rs8121146 | 0.86[ASN][1000 genomes] |
| rs8123862 | 0.90[ASN][1000 genomes] |
| rs9509 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC12A5 | Proximal transcriptional regulation |
| ENSG00000204044 | Proximal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014