SNP Report
| Name | rs9509   dbSNP |
|---|---|
| Location | chr:20,44645153 |
| Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12479823 | 0.87[EUR][1000 genomes] |
| rs12480597 | 0.87[EUR][1000 genomes] |
| rs12480942 | 0.82[EUR][1000 genomes] |
| rs12481671 | 0.87[EUR][1000 genomes] |
| rs13969 | 0.97[ASN][1000 genomes] |
| rs35300540 | 0.87[EUR][1000 genomes] |
| rs35804246 | 0.82[EUR][1000 genomes] |
| rs3746514 | 0.87[EUR][1000 genomes] |
| rs3746516 | 0.82[EUR][1000 genomes] |
| rs3746517 | 0.82[EUR][1000 genomes] |
| rs3746518 | 0.82[EUR][1000 genomes] |
| rs3746519 | 0.82[EUR][1000 genomes] |
| rs3746520 | 0.82[EUR][1000 genomes] |
| rs3848723 | 0.87[EUR][1000 genomes] |
| rs3848724 | 0.87[EUR][1000 genomes] |
| rs3918273 | 0.87[EUR][1000 genomes] |
| rs3918274 | 0.87[EUR][1000 genomes] |
| rs3918275 | 0.92[AFR][1000 genomes] |
| rs4810483 | 0.82[EUR][1000 genomes] |
| rs4812984 | 0.87[EUR][1000 genomes] |
| rs4812985 | 0.82[EUR][1000 genomes] |
| rs57489591 | 0.87[EUR][1000 genomes] |
| rs60551459 | 0.87[EUR][1000 genomes] |
| rs6094237 | 0.95[ASN][1000 genomes] |
| rs61088297 | 0.87[EUR][1000 genomes] |
| rs61601349 | 0.87[EUR][1000 genomes] |
| Symbol | Regulation type |
|---|---|
| MMP9 | Proximal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| ENSG00000204044 | RNA binding protein mediated regulation |
| MMP9 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014




