SNP Report
Basic Infomation
| Name | rs13969 dbSNP |
|---|---|
| Location | chr:20,44642833 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11696804 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11697325 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11698788 | 0.84[EUR][1000 genomes] |
| rs13040272 | 0.89[EUR][1000 genomes] |
| rs17576 | 0.83[EUR][1000 genomes] |
| rs20544 | 0.83[EUR][1000 genomes] |
| rs34109603 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35567443 | 0.81[EUR][1000 genomes] |
| rs3918240 | 0.81[EUR][1000 genomes] |
| rs3918249 | 0.82[EUR][1000 genomes] |
| rs3918253 | 0.82[EUR][1000 genomes] |
| rs3918256 | 0.82[EUR][1000 genomes] |
| rs3933239 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56242234 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6065913 | 0.81[EUR][1000 genomes] |
| rs6094237 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6104417 | 0.86[EUR][1000 genomes] |
| rs6104418 | 0.89[EUR][1000 genomes] |
| rs8113877 | 0.89[EUR][1000 genomes] |
| rs8114050 | 0.81[EUR][1000 genomes] |
| rs9509 | 0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000229957 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| ENSG00000204044 | RNA binding protein mediated regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014