SNP Report

Basic Infomation

Name	rs12480008 dbSNP
Location	chr:20,44676777
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696784	1.00[AFR][1000 genomes]
rs11696804	1.00[CHB][hapmap]
rs12479764	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12479993	1.00[AFR][1000 genomes]
rs12480045	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12480597	1.00[AFR][1000 genomes]
rs12480744	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12480874	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12480942	0.81[EUR][1000 genomes]
rs12481093	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12481120	1.00[AFR][1000 genomes]
rs12481488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13040272	1.00[CHB][hapmap]
rs16985435	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16991024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16991026	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991062	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16991072	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1805088	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs2868365	1.00[AFR][1000 genomes]
rs35300540	1.00[AFR][1000 genomes]
rs35804246	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3746514	1.00[AFR][1000 genomes]
rs3746516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3746517	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3746518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3746519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3746520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3848723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs3848724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs3901163	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3918273	1.00[AFR][1000 genomes]
rs3918274	1.00[AFR][1000 genomes]
rs3933239	1.00[CHB][hapmap]
rs4810483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4812984	1.00[AFR][1000 genomes]
rs4812985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4812986	1.00[CEU][hapmap]
rs4812987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4812989	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs57489591	1.00[AFR][1000 genomes]
rs59253654	1.00[AFR][1000 genomes]
rs6032636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60551459	1.00[AFR][1000 genomes]
rs61088297	1.00[AFR][1000 genomes]
rs8113877	1.00[CHB][hapmap]
rs8114050	1.00[CHB][hapmap]
rs8123862	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
SLC12A5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)