SNP Report
Basic Infomation
| Name | rs6032653 dbSNP |
|---|---|
| Location | chr:20,44723260 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086998 | 1.00[ASN][1000 genomes] |
| rs11086999 | 1.00[ASN][1000 genomes] |
| rs11569329 | 1.00[ASN][1000 genomes] |
| rs11569346 | 1.00[ASN][1000 genomes] |
| rs12479764 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12480045 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12480744 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12480874 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12480937 | 1.00[ASN][1000 genomes] |
| rs12481093 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12481120 | 1.00[ASN][1000 genomes] |
| rs16991026 | 0.81[AMR][1000 genomes] |
| rs16991062 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16991072 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3901163 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4810487 | 1.00[ASN][1000 genomes] |
| rs4812989 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4813000 | 1.00[ASN][1000 genomes] |
| rs4813006 | 1.00[ASN][1000 genomes] |
| rs4813007 | 1.00[ASN][1000 genomes] |
| rs4813008 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Proximal transcriptional regulation |
| RPL13P2 | Proximal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014