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rVarBase
SNP Report
Basic Infomation
Name
rs2425750  
dbSNP
Location
chr:20,44695191
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11569301
1.00[AMR][1000 genomes]
rs11569315
1.00[AMR][1000 genomes]
rs2024569
1.00[AMR][1000 genomes]
rs2664528
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4812987
1.00[YRI][hapmap]
rs56762626
0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58298647
1.00[AMR][1000 genomes]
rs58917883
1.00[AMR][1000 genomes]
rs61060781
1.00[AMR][1000 genomes]
rs73299205
0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308789
0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310711
1.00[AMR][1000 genomes]
rs73310721
1.00[AMR][1000 genomes]
rs73310728
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
NCOA5
Distal transcriptional regulation
NCOA5
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)