SNP Report

Basic Infomation

Name	rs6032592 dbSNP
Location	chr:20,44560401
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1810323	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2250889	1.00[CEU][hapmap]
rs2282073	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3746507	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3746510	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3848715	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3848716	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3848717	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4141957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4810478	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4810480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4810481	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4812976	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4812977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812979	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6017713	0.92[ASN][1000 genomes]
rs6017715	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6017716	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6032606	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6032610	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6032611	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6032619	1.00[CEU][hapmap]
rs6065909	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6065910	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6073955	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6073969	0.89[AMR][1000 genomes]
rs6104398	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62213344	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PCIF1	Proximal transcriptional regulation
DNTTIP1	Distal transcriptional regulation
SPATA25	Distal transcriptional regulation
NEURL2	Distal transcriptional regulation
CTSA	Distal transcriptional regulation
TNNC2	Distal transcriptional regulation
LPCAT1	Distal transcriptional regulation
PLTP	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
C8orf70	SCAN
PLTP	seeQTL