SNP Report

Basic Infomation

Name	rs4812977 dbSNP
Location	chr:20,44558073
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1810323	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2250889	1.00[CEU][hapmap]
rs2282073	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3746507	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3746510	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3848715	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3848716	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3848717	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4141957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4810478	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4810480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4810481	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4812976	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4812979	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6017713	0.92[ASN][1000 genomes]
rs6017715	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6017716	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6032592	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032606	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6032610	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6032611	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6032619	1.00[CEU][hapmap]
rs6065909	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6065910	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6073955	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6073969	0.89[AMR][1000 genomes]
rs6104398	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62213344	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ACOT8	Distal transcriptional regulation
ZSWIM3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)