SNP Report
Name | rs4812974   dbSNP |
---|---|
Location | chr:20,44510814 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1045493 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes] |
rs11699781 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs13045440 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs1516580 | 0.96[CEU][hapmap];0.85[EUR][1000 genomes] |
rs174745 | 0.92[CEU][hapmap];0.85[EUR][1000 genomes] |
rs191805 | 0.84[EUR][1000 genomes] |
rs1967656 | 0.82[CEU][hapmap];0.81[AMR][1000 genomes] |
rs197662 | 0.82[EUR][1000 genomes] |
rs2075961 | 0.83[EUR][1000 genomes] |
rs2075962 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs2075963 | 0.83[EUR][1000 genomes] |
rs2868359 | 0.82[CEU][hapmap] |
rs2868360 | 0.81[AMR][1000 genomes] |
rs2868362 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs2903808 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs3746497 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs3746499 | 0.96[CEU][hapmap];0.89[EUR][1000 genomes] |
rs3761156 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes] |
rs3817731 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs3848713 | 0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4608591 | 0.96[CEU][hapmap];0.83[EUR][1000 genomes] |
rs4810476 | 0.96[CEU][hapmap];0.83[EUR][1000 genomes] |
rs4812967 | 0.82[AMR][1000 genomes] |
rs553359 | 0.92[CEU][hapmap] |
rs59782893 | 0.83[EUR][1000 genomes] |
rs6032570 | 0.83[EUR][1000 genomes] |
rs6094220 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6094223 | 0.87[EUR][1000 genomes] |
rs6094224 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6104374 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6104376 | 0.81[AMR][1000 genomes] |
rs6104380 | 0.80[AMR][1000 genomes] |
rs6104383 | 0.82[AMR][1000 genomes] |
rs6104384 | 0.82[AMR][1000 genomes] |
rs6104385 | 0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6104387 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6130950 | 0.81[AMR][1000 genomes] |
rs6130957 | 0.81[AMR][1000 genomes] |
rs6130958 | 0.95[CEU][hapmap];0.81[AMR][1000 genomes] |
rs6130959 | 0.82[CEU][hapmap] |
rs6514065 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs722669 | 0.82[CEU][hapmap];0.81[AMR][1000 genomes] |
rs7268221 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs742034 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs8116218 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes] |
Symbol | Regulation type |
---|---|
CTSA | Distal transcriptional regulation |
PLTP | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
ACOT8 | Distal transcriptional regulation |
ZSWIM3 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ZSWIM1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ZSWIM1 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014