SNP Report
Basic Infomation
| Name | rs1516580 dbSNP |
|---|---|
| Location | chr:20,44517360 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1045493 | 0.85[CEU][hapmap] |
| rs174745 | 0.96[CEU][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs191805 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs197662 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs197669 | 0.89[MEX][hapmap] |
| rs2075961 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2075962 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2075963 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2868362 | 0.85[CEU][hapmap] |
| rs2903808 | 0.96[CEU][hapmap];0.81[TSI][hapmap] |
| rs3746497 | 0.85[CEU][hapmap] |
| rs3746499 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3817731 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3848713 | 0.90[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs4608591 | 0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4810476 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4812974 | 0.96[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs553359 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs59782893 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6032570 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6094223 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6094224 | 0.85[CEU][hapmap] |
| rs6104374 | 0.85[CEU][hapmap] |
| rs6104385 | 0.85[CEU][hapmap] |
| rs6130958 | 0.90[CEU][hapmap] |
| rs6514065 | 0.88[CEU][hapmap];0.81[TSI][hapmap] |
| rs7268221 | 0.85[CEU][hapmap] |
| rs742034 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CTSA | Proximal transcriptional regulation |
| NEURL2 | Proximal transcriptional regulation |
| SPATA25 | Proximal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| NEURL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014