SNP Report

Basic Infomation

Name	rs3746499 dbSNP
Location	chr:20,44509762
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1045493	0.85[CEU][hapmap]
rs13045440	0.83[EUR][1000 genomes]
rs1516580	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs174745	0.96[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs191805	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs197662	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs197669	1.00[MEX][hapmap]
rs2075961	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2075962	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2075963	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2868362	0.85[CEU][hapmap]
rs2903808	0.96[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs370237	0.83[MEX][hapmap]
rs3746497	0.85[CEU][hapmap]
rs380397	0.83[MEX][hapmap]
rs3817731	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3848713	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs386155	0.83[MEX][hapmap]
rs437122	0.83[MEX][hapmap]
rs4608591	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4810476	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4812972	0.81[EUR][1000 genomes]
rs4812974	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs553359	0.96[CEU][hapmap];0.80[CHB][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59782893	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6032570	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6094223	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6094224	0.85[CEU][hapmap]
rs6104374	0.86[CEU][hapmap]
rs6104385	0.85[CEU][hapmap]
rs6130958	0.90[CEU][hapmap]
rs6514065	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs7268221	0.85[CEU][hapmap]
rs742034	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZSWIM1	Proximal transcriptional regulation
SNRPA	Distal transcriptional regulation
CTSA	Distal transcriptional regulation
PLTP	Distal transcriptional regulation
ACOT8	Distal transcriptional regulation
ZSWIM3	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation
ENSG00000221046	Distal transcriptional regulation
ZNF335	Distal transcriptional regulation
TNNC2	Distal transcriptional regulation
SNX21	Distal transcriptional regulation
H3F3B	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
DNTTIP1	SCAN
CTSA	SCAN
NCRNA00275	SCAN
GTSF1L	SCAN
NEURL2	SCAN