SNP Report
Basic Infomation
| Name | rs509701 dbSNP |
|---|---|
| Location | chr:11,63774597 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 82)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751004 | 0.80[EUR][1000 genomes] |
| rs10792424 | 0.80[EUR][1000 genomes] |
| rs10897459 | 0.88[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap] |
| rs10897465 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes] |
| rs10897466 | 0.82[TSI][hapmap] |
| rs10897467 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10897469 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10897470 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11231603 | 1.00[YRI][hapmap] |
| rs11231628 | 0.88[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap] |
| rs11231643 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11231646 | 0.81[CEU][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs11231655 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11231662 | 0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11231663 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11231664 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11231670 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11231671 | 0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11600062 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11601228 | 0.81[EUR][1000 genomes] |
| rs11605797 | 0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12417157 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12417507 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12421757 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12786124 | 0.88[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap] |
| rs12790749 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12797540 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12798491 | 0.81[MEX][hapmap] |
| rs12800703 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12808604 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1386346 | 0.80[TSI][hapmap] |
| rs1684950 | 0.80[EUR][1000 genomes] |
| rs2129467 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2186572 | 1.00[YRI][hapmap] |
| rs224170 | 1.00[LWK][hapmap] |
| rs224173 | 0.81[AMR][1000 genomes] |
| rs2318126 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs3019785 | 0.81[AMR][1000 genomes] |
| rs320156 | 0.88[MEX][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs34134698 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34595065 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3740636 | 0.81[MEX][hapmap] |
| rs3740637 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3802940 | 1.00[JPT][hapmap] |
| rs449047 | 0.88[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap] |
| rs454474 | 0.88[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap] |
| rs479975 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs481835 | 0.81[MEX][hapmap];0.82[TSI][hapmap] |
| rs483340 | 0.88[MEX][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs487540 | 0.80[EUR][1000 genomes] |
| rs488082 | 0.80[EUR][1000 genomes] |
| rs492357 | 0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4980499 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4980500 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4980501 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4980512 | 0.81[MEX][hapmap] |
| rs4980516 | 0.80[EUR][1000 genomes] |
| rs4980517 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4980530 | 0.88[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap] |
| rs499118 | 0.80[EUR][1000 genomes] |
| rs501278 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs502858 | 0.80[EUR][1000 genomes] |
| rs504060 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs523586 | 0.84[AMR][1000 genomes] |
| rs539432 | 0.82[EUR][1000 genomes] |
| rs553724 | 0.81[EUR][1000 genomes] |
| rs562865 | 0.82[EUR][1000 genomes] |
| rs567386 | 0.88[MEX][hapmap];0.80[TSI][hapmap] |
| rs578295 | 0.80[EUR][1000 genomes] |
| rs579669 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs581355 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs646384 | 1.00[YRI][hapmap] |
| rs660070 | 1.00[YRI][hapmap] |
| rs67136175 | 0.89[EUR][1000 genomes] |
| rs7112348 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs728919 | 0.81[MEX][hapmap] |
| rs7926608 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7936614 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7938498 | 0.81[MEX][hapmap];0.80[TSI][hapmap] |
| rs7942318 | 0.80[EUR][1000 genomes] |
| rs928948 | 0.88[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap] |
| rs947939 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OTUB1 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014