SNP Report
Basic Infomation
| Name | rs10897467 dbSNP |
|---|---|
| Location | chr:11,63727318 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 68)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751004 | 0.81[EUR][1000 genomes] |
| rs10792424 | 0.81[EUR][1000 genomes] |
| rs10897465 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10897466 | 0.81[EUR][1000 genomes] |
| rs10897469 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10897470 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11231643 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11231646 | 0.85[EUR][1000 genomes] |
| rs11231655 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11231662 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11231663 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11231664 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11231670 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11231671 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11600062 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11601228 | 0.85[EUR][1000 genomes] |
| rs11605797 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12417157 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12417507 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12421757 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12786124 | 0.83[AMR][1000 genomes] |
| rs12790749 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12797540 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12800703 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12808604 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1684950 | 0.81[EUR][1000 genomes] |
| rs1783964 | 0.83[EUR][1000 genomes] |
| rs2129467 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs224173 | 0.86[AMR][1000 genomes] |
| rs3019782 | 0.83[EUR][1000 genomes] |
| rs3019785 | 0.86[AMR][1000 genomes] |
| rs320121 | 0.83[EUR][1000 genomes] |
| rs320156 | 0.81[EUR][1000 genomes] |
| rs34134698 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34595065 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3740637 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs479975 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs481835 | 0.84[EUR][1000 genomes] |
| rs483340 | 0.81[EUR][1000 genomes] |
| rs487540 | 0.81[EUR][1000 genomes] |
| rs488082 | 0.81[EUR][1000 genomes] |
| rs492357 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4980499 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4980500 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4980501 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4980516 | 0.81[EUR][1000 genomes] |
| rs4980517 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs499118 | 0.81[EUR][1000 genomes] |
| rs501278 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs502858 | 0.81[EUR][1000 genomes] |
| rs504060 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs509701 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs529915 | 0.83[EUR][1000 genomes] |
| rs539432 | 0.83[EUR][1000 genomes] |
| rs553724 | 0.81[EUR][1000 genomes] |
| rs562865 | 0.82[EUR][1000 genomes] |
| rs567386 | 0.81[EUR][1000 genomes] |
| rs578295 | 0.81[EUR][1000 genomes] |
| rs579669 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs581355 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs67136175 | 0.89[EUR][1000 genomes] |
| rs709594 | 0.81[EUR][1000 genomes] |
| rs7112348 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7926608 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7928990 | 0.81[EUR][1000 genomes] |
| rs7936614 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7938498 | 0.83[EUR][1000 genomes] |
| rs7942318 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014