SNP Report
Basic Infomation
| Name | rs553724 dbSNP |
|---|---|
| Location | chr:11,63773524 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 71)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751004 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10792424 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10897464 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10897466 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs10897467 | 0.81[EUR][1000 genomes] |
| rs10897468 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10897470 | 0.82[EUR][1000 genomes] |
| rs11231646 | 0.88[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11231653 | 0.92[EUR][1000 genomes] |
| rs11231662 | 0.82[EUR][1000 genomes] |
| rs11231663 | 0.83[EUR][1000 genomes] |
| rs11231664 | 0.82[EUR][1000 genomes] |
| rs11231670 | 0.82[EUR][1000 genomes] |
| rs11231671 | 0.82[EUR][1000 genomes] |
| rs11600062 | 0.82[EUR][1000 genomes] |
| rs11601228 | 0.95[EUR][1000 genomes] |
| rs11607028 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12291575 | 0.81[JPT][hapmap] |
| rs12417157 | 0.83[EUR][1000 genomes] |
| rs12790749 | 0.97[EUR][1000 genomes] |
| rs12798491 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs12800703 | 0.82[EUR][1000 genomes] |
| rs12808604 | 0.98[EUR][1000 genomes] |
| rs1386346 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1684950 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1783964 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2129467 | 0.82[EUR][1000 genomes] |
| rs2508584 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3019782 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs320121 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs320156 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34134698 | 0.80[EUR][1000 genomes] |
| rs35492216 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3740636 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4426138 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs473243 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs479975 | 0.82[EUR][1000 genomes] |
| rs480211 | 0.81[CHB][hapmap] |
| rs481835 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs483340 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs487540 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs488082 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs492357 | 0.82[EUR][1000 genomes] |
| rs4980512 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4980516 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4980517 | 0.81[EUR][1000 genomes] |
| rs499118 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs500493 | 0.83[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs502858 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs504060 | 0.82[EUR][1000 genomes] |
| rs504314 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs509701 | 0.81[EUR][1000 genomes] |
| rs528927 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs529915 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs539432 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs540389 | 0.81[CHB][hapmap] |
| rs562865 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs567386 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs578295 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs579669 | 0.80[EUR][1000 genomes] |
| rs6591830 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs709594 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7111130 | 0.80[EUR][1000 genomes] |
| rs728919 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7926608 | 0.81[EUR][1000 genomes] |
| rs7928990 | 0.94[EUR][1000 genomes] |
| rs7936614 | 0.80[EUR][1000 genomes] |
| rs7938498 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7942318 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7951529 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9943682 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OTUB1 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014