SNP Report

Basic Infomation

Name	rs11231646 dbSNP
Location	chr:11,63702635
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 98)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10736731	0.80[CHB][hapmap]
rs10751004	0.81[EUR][1000 genomes]
rs10792422	0.84[CHB][hapmap]
rs10792424	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10897454	0.80[CHB][hapmap]
rs10897459	0.93[TSI][hapmap]
rs10897464	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10897465	0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10897466	0.85[CEU][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs10897467	0.85[EUR][1000 genomes]
rs10897468	0.85[AMR][1000 genomes]
rs10897469	0.82[EUR][1000 genomes]
rs10897470	0.84[EUR][1000 genomes]
rs11231628	0.88[TSI][hapmap]
rs11231640	0.85[CEU][hapmap];0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs11231643	0.84[EUR][1000 genomes]
rs11231653	0.86[EUR][1000 genomes]
rs11231655	0.89[EUR][1000 genomes]
rs11231662	0.85[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs11231663	0.84[EUR][1000 genomes]
rs11231664	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11231670	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11231671	0.85[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs11600062	0.83[EUR][1000 genomes]
rs11601228	0.80[EUR][1000 genomes]
rs11602912	0.87[AFR][1000 genomes]
rs11605797	0.85[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap]
rs11607028	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12417157	0.84[EUR][1000 genomes]
rs12417507	0.90[EUR][1000 genomes]
rs12421757	0.90[EUR][1000 genomes]
rs12786124	0.81[GIH][hapmap];0.91[TSI][hapmap]
rs12797540	0.90[EUR][1000 genomes]
rs12798491	0.85[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs12800703	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs12808604	0.80[EUR][1000 genomes]
rs1386346	0.93[ASW][hapmap];0.85[CEU][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1684950	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1783964	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1872772	0.80[CHB][hapmap]
rs2129467	0.84[EUR][1000 genomes]
rs2318126	0.88[TSI][hapmap]
rs2508584	0.85[AMR][1000 genomes]
rs2840079	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs3019782	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs320121	0.81[EUR][1000 genomes]
rs320156	0.87[ASW][hapmap];0.85[CEU][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34134698	0.83[EUR][1000 genomes]
rs3740636	0.93[ASW][hapmap];0.85[CEU][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3740637	0.81[CEU][hapmap];0.86[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4426138	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs449047	0.86[TSI][hapmap]
rs454474	0.86[TSI][hapmap]
rs473243	0.88[AMR][1000 genomes]
rs479975	0.83[EUR][1000 genomes]
rs481835	0.85[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs483340	0.93[ASW][hapmap];0.85[CEU][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs487540	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs488082	0.85[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs492357	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs4980499	0.85[CEU][hapmap];0.86[GIH][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4980500	0.85[CEU][hapmap];0.86[GIH][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4980501	0.81[EUR][1000 genomes]
rs4980512	0.81[ASW][hapmap];0.85[CEU][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4980516	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4980517	0.83[EUR][1000 genomes]
rs4980528	0.80[CHB][hapmap]
rs4980529	0.80[CHB][hapmap]
rs4980530	0.93[TSI][hapmap]
rs4980533	0.86[CHB][hapmap]
rs499118	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs500493	0.93[ASW][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes]
rs502858	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs504060	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs509701	0.81[CEU][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs528927	0.89[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes]
rs529915	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs539432	0.85[CEU][hapmap]
rs553724	0.88[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs562865	0.85[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs567386	0.93[ASW][hapmap];0.85[CEU][hapmap];0.89[JPT][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs578295	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6591825	0.86[CHB][hapmap]
rs6591830	0.85[AMR][1000 genomes]
rs709594	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7108375	0.80[CHB][hapmap]
rs7110843	0.80[CHB][hapmap]
rs7112348	0.88[EUR][1000 genomes]
rs7118913	0.80[CHB][hapmap]
rs728919	0.93[ASW][hapmap];0.85[CEU][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7926608	0.85[EUR][1000 genomes]
rs7936614	0.85[EUR][1000 genomes]
rs7938498	0.87[ASW][hapmap];0.85[CEU][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7942318	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7944519	0.80[CHB][hapmap]
rs7951529	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs928948	0.88[TSI][hapmap]
rs9943682	0.81[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
NAA40	Proximal transcriptional regulation
NAA40	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)