SNP Report
Basic Infomation
| Name | rs454474 dbSNP |
|---|---|
| Location | chr:11,63615628 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751001 | 0.96[EUR][1000 genomes] |
| rs10897456 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10897459 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10897465 | 0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs11231603 | 1.00[YRI][hapmap] |
| rs11231623 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11231628 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs11231637 | 0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11231643 | 0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11231646 | 0.86[TSI][hapmap] |
| rs11231662 | 0.92[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap] |
| rs11231664 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs11231670 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs11231671 | 0.92[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap] |
| rs11605797 | 0.92[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap] |
| rs12786124 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12792726 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12800703 | 0.87[CEU][hapmap];1.00[YRI][hapmap] |
| rs1486936 | 0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs224170 | 1.00[LWK][hapmap] |
| rs224173 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2318126 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3019785 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs320109 | 0.85[JPT][hapmap] |
| rs3740637 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap] |
| rs3850943 | 0.97[EUR][1000 genomes] |
| rs4143327 | 0.85[ASN][1000 genomes] |
| rs449047 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs492357 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs4963433 | 0.97[EUR][1000 genomes] |
| rs4980499 | 0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap] |
| rs4980500 | 0.92[CEU][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap] |
| rs4980530 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs504060 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs509701 | 0.88[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap] |
| rs61886128 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7105288 | 0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs7121067 | 0.87[ASN][1000 genomes] |
| rs7928919 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7939416 | 0.86[EUR][1000 genomes] |
| rs7950543 | 0.89[AFR][1000 genomes] |
| rs928948 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MARK2 | Proximal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
| MARK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014