SNP Report

Basic Infomation

Name	rs4980530 dbSNP
Location	chr:11,63661512
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10751001	0.90[EUR][1000 genomes]
rs10897456	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10897459	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897465	0.81[CEU][hapmap]
rs11231623	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11231628	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11231637	0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11231643	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11231646	0.93[TSI][hapmap]
rs11231655	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11231662	0.92[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs11231664	0.92[CEU][hapmap]
rs11231670	0.92[CEU][hapmap]
rs11231671	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs11605797	0.92[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap]
rs12417507	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12421757	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12786124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792726	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12797540	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12798491	0.80[TSI][hapmap]
rs12800703	0.87[CEU][hapmap]
rs1386346	0.81[TSI][hapmap]
rs1486936	0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs224173	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2318126	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3019785	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320109	0.85[JPT][hapmap]
rs320156	0.81[TSI][hapmap]
rs3740636	0.83[TSI][hapmap]
rs3740637	0.88[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3850943	0.90[EUR][1000 genomes]
rs4143327	0.90[ASN][1000 genomes]
rs449047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs454474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs483340	0.81[TSI][hapmap]
rs492357	0.89[CEU][hapmap]
rs4963433	0.90[EUR][1000 genomes]
rs4980499	0.92[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4980500	0.92[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4980512	0.83[TSI][hapmap]
rs504060	0.89[CEU][hapmap]
rs509701	0.88[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs567386	0.81[TSI][hapmap]
rs61886128	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105288	0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7112348	0.82[AMR][1000 genomes]
rs7121067	0.92[ASN][1000 genomes]
rs728919	0.83[TSI][hapmap]
rs7928919	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7938498	0.81[TSI][hapmap]
rs7939416	0.84[EUR][1000 genomes]
rs928948	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MARK2	Proximal transcriptional regulation
MARK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)