SNP Report

Basic Infomation

Name	rs11231643 dbSNP
Location	chr:11,63698289
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897456	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10897459	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10897465	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10897467	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10897469	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10897470	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231623	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11231628	0.87[EUR][1000 genomes]
rs11231637	0.90[ASN][1000 genomes]
rs11231646	0.84[EUR][1000 genomes]
rs11231655	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11231662	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231663	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11231664	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231670	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231671	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11600062	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11605797	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12417157	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12417507	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12421757	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12786124	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12792726	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12797540	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12800703	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1486936	0.90[ASN][1000 genomes]
rs2129467	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs224173	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2318126	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3019785	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34134698	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34595065	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3740637	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4143327	0.88[ASN][1000 genomes]
rs449047	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs454474	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs479975	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs492357	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4980499	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4980500	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4980501	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4980517	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4980530	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs501278	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs504060	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs509701	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs579669	0.82[EUR][1000 genomes]
rs581355	0.83[AMR][1000 genomes]
rs61886128	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7105288	0.90[ASN][1000 genomes]
rs7112348	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7121067	0.90[ASN][1000 genomes]
rs7926608	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7928919	0.92[ASN][1000 genomes]
rs7936614	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7950543	1.00[AFR][1000 genomes]
rs928948	0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
COX8A	Distal transcriptional regulation
ENSG00000256100	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)