SNP Report
Basic Infomation
| Name | rs10897465 dbSNP |
|---|---|
| Location | chr:11,63722448 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897459 | 0.81[CEU][hapmap] |
| rs10897467 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10897469 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10897470 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11231603 | 1.00[YRI][hapmap] |
| rs11231628 | 0.81[CEU][hapmap] |
| rs11231643 | 0.90[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11231646 | 0.86[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs11231655 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231662 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11231663 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11231664 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11231670 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11231671 | 0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs11600062 | 0.88[EUR][1000 genomes] |
| rs11605797 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12417157 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12417507 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12421757 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12786124 | 0.81[CEU][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap] |
| rs12797540 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12800703 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2129467 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2186572 | 1.00[YRI][hapmap] |
| rs224170 | 1.00[LWK][hapmap] |
| rs2318126 | 0.81[CEU][hapmap] |
| rs34134698 | 0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34595065 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3740637 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs449047 | 0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs454474 | 0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs479975 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs492357 | 0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes] |
| rs4980499 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4980500 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4980501 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4980517 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4980530 | 0.81[CEU][hapmap] |
| rs501278 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs504060 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs509701 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes] |
| rs579669 | 0.85[EUR][1000 genomes] |
| rs581355 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs646384 | 1.00[YRI][hapmap] |
| rs660070 | 1.00[YRI][hapmap] |
| rs67136175 | 0.80[EUR][1000 genomes] |
| rs7112348 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7926608 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7936614 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7950543 | 0.90[AFR][1000 genomes] |
| rs928948 | 0.81[CEU][hapmap] |
| rs947939 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NAA40 | Proximal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| C11orf95 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| NAA40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014