SNP Report

Basic Infomation

Name	rs947939 dbSNP
Location	chr:11,63885287
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1011219	0.81[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs10897465	1.00[YRI][hapmap]
rs11231662	1.00[YRI][hapmap]
rs11231664	1.00[YRI][hapmap]
rs11231670	1.00[YRI][hapmap]
rs11231710	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11231713	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11231726	0.82[CHD][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs11600628	0.88[EUR][1000 genomes]
rs11600667	0.90[EUR][1000 genomes]
rs11604083	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11605193	0.90[EUR][1000 genomes]
rs11605797	1.00[YRI][hapmap]
rs11605856	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11607903	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12417635	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12419038	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12800703	1.00[YRI][hapmap]
rs17773078	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2005272	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2096706	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2186572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3862371	0.90[EUR][1000 genomes]
rs492357	1.00[YRI][hapmap]
rs4980499	1.00[YRI][hapmap]
rs4980500	1.00[YRI][hapmap]
rs504060	1.00[YRI][hapmap]
rs509701	1.00[YRI][hapmap]
rs55942618	0.95[EUR][1000 genomes]
rs55970968	0.88[EUR][1000 genomes]
rs56207008	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56311067	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57021319	0.88[EUR][1000 genomes]
rs59198765	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60394481	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61083753	0.85[EUR][1000 genomes]
rs646384	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs660070	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs683996	0.81[TSI][hapmap]
rs7103915	0.83[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs7109921	0.88[EUR][1000 genomes]
rs7122408	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7123026	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs734762	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7941773	0.87[EUR][1000 genomes]
rs876064	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[JPT][hapmap]
rs915987	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
OTUB1	Distal transcriptional regulation
MACROD1	Distal transcriptional regulation
MACROD1	RNA binding protein mediated regulation
FLRT1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
CCDC88B	seeQTL
FKBP2	SCAN
CCDC88B	SCAN
RAB1B	SCAN
CCS	SCAN
RBM14	SCAN
FKBP2	SCAN