SNP Report

Basic Infomation

Name	rs7941773 dbSNP
Location	chr:11,63952759
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1011219	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11231710	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11231713	0.89[EUR][1000 genomes]
rs11231726	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11600628	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11600667	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11604083	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11605193	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11605856	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11607903	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417635	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12419038	0.90[ASN][1000 genomes]
rs17773078	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2005272	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2096706	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2186572	0.87[EUR][1000 genomes]
rs3862371	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55942618	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55970968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56207008	0.90[EUR][1000 genomes]
rs56311067	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57021319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59198765	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60394481	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7103915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122408	0.80[EUR][1000 genomes]
rs7123026	0.88[EUR][1000 genomes]
rs734762	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs947939	0.87[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
STIP1	Proximal transcriptional regulation
KHDRBS1	Distal transcriptional regulation
C17orf76-AS1	Distal transcriptional regulation
RPS16	Distal transcriptional regulation
SUPT5H	Distal transcriptional regulation
RNU5F-1	Distal transcriptional regulation
ANP32E	Distal transcriptional regulation
CORO1C	Distal transcriptional regulation
PPP3R1	Distal transcriptional regulation
OXSM	Distal transcriptional regulation
NGLY1	Distal transcriptional regulation
SERPINB1	Distal transcriptional regulation
SRF	Distal transcriptional regulation
ENSG00000256100	Distal transcriptional regulation
MACROD1	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
TRMT112	Distal transcriptional regulation
PRDX5	Distal transcriptional regulation
MARK2	Distal transcriptional regulation
OTUB1	Distal transcriptional regulation
CORO7	Distal transcriptional regulation
DNAJA3	Distal transcriptional regulation
GPR137	Distal transcriptional regulation
BAD	Distal transcriptional regulation
STIP1	Distal transcriptional regulation
FERMT3	Distal transcriptional regulation
KCNK4	Distal transcriptional regulation
HIST1H4E	Distal transcriptional regulation
MIR21	Distal transcriptional regulation
WDR74	Distal transcriptional regulation
NAA40	Distal transcriptional regulation
TEX40	Distal transcriptional regulation
ENSG00000256116	Distal transcriptional regulation
VEGFB	Distal transcriptional regulation
FKBP2	Distal transcriptional regulation
CCDC88B	Distal transcriptional regulation
PPP1R14B	Distal transcriptional regulation
ENSG00000256940	Distal transcriptional regulation
PLCB3	Distal transcriptional regulation
TRPT1	Distal transcriptional regulation
NUDT22	Distal transcriptional regulation
DNAJC4	Distal transcriptional regulation
PDCD4	Distal transcriptional regulation
ENSG00000203497	Distal transcriptional regulation
TPI1	Distal transcriptional regulation
INTS6	Distal transcriptional regulation
ZNF564	Distal transcriptional regulation
ENSG00000196826	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)