SNP Report
Basic Infomation
| Name | rs12419038 dbSNP |
|---|---|
| Location | chr:11,63912736 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1011219 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11231710 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231713 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11231726 | 0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11600628 | 0.88[ASN][1000 genomes] |
| rs11604083 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11605856 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11607903 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12417635 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17773078 | 0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2096706 | 0.91[CEU][hapmap];1.00[YRI][hapmap] |
| rs2186572 | 0.83[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs55942618 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55970968 | 0.88[ASN][1000 genomes] |
| rs56207008 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56311067 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57021319 | 0.92[ASN][1000 genomes] |
| rs59198765 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60394481 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61083753 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7103915 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7109921 | 0.88[ASN][1000 genomes] |
| rs7123026 | 1.00[YRI][hapmap];0.82[EUR][1000 genomes] |
| rs734762 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7941773 | 0.90[ASN][1000 genomes] |
| rs947939 | 0.91[CEU][hapmap];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MARK2 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014