SNP Report
Basic Infomation
| Name | rs55970968 dbSNP |
|---|---|
| Location | chr:11,63961433 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1011219 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231710 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11231713 | 0.90[EUR][1000 genomes] |
| rs11231726 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11600628 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11600667 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11604083 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11605193 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11605856 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11607903 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12417635 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12419038 | 0.88[ASN][1000 genomes] |
| rs17773078 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2005272 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2096706 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2186572 | 0.88[EUR][1000 genomes] |
| rs3862371 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs55942618 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56207008 | 0.91[EUR][1000 genomes] |
| rs56311067 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs57021319 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs59198765 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60394481 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7103915 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7109921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7122408 | 0.81[EUR][1000 genomes] |
| rs7123026 | 0.89[EUR][1000 genomes] |
| rs734762 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7941773 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs947939 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Proximal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| ENSG00000256116 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014