SNP Report
Basic Infomation
| Name | rs683996 dbSNP |
|---|---|
| Location | chr:11,63874943 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1011219 | 0.83[CEU][hapmap] |
| rs17773078 | 0.82[CEU][hapmap] |
| rs2096706 | 0.81[TSI][hapmap] |
| rs632603 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs641811 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs646384 | 0.83[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs647304 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs651359 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs660070 | 0.81[CHD][hapmap] |
| rs7103915 | 0.84[CEU][hapmap] |
| rs947939 | 0.81[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FLRT1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
| FLRT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014