SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897465	1.00[YRI][hapmap]
rs11231662	1.00[YRI][hapmap]
rs11231664	1.00[YRI][hapmap]
rs11231670	1.00[YRI][hapmap]
rs11231713	1.00[ASW][hapmap]
rs11605797	1.00[YRI][hapmap]
rs12786124	1.00[YRI][hapmap]
rs12800703	1.00[YRI][hapmap]
rs1807304	0.89[CEU][hapmap]
rs2005261	0.81[CEU][hapmap]
rs2096706	1.00[ASW][hapmap]
rs2186572	1.00[YRI][hapmap]
rs2701542	0.84[CEU][hapmap]
rs2845889	0.81[CEU][hapmap]
rs492357	1.00[YRI][hapmap]
rs4980499	1.00[YRI][hapmap]
rs4980500	1.00[YRI][hapmap]
rs504060	1.00[YRI][hapmap]
rs509701	1.00[YRI][hapmap]
rs582692	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs617856	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs646384	1.00[ASW][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs683996	0.81[CHD][hapmap]
rs876064	1.00[ASW][hapmap]
rs915987	1.00[ASW][hapmap]
rs947939	1.00[ASW][hapmap];1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
FLRT1	Distal transcriptional regulation
MACROD1	RNA binding protein mediated regulation
ENSG00000256824	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 10)