SNP Report
Basic Infomation
| Name | rs876064 dbSNP |
|---|---|
| Location | chr:11,64037033 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792430 | 0.88[YRI][hapmap] |
| rs10897488 | 0.88[YRI][hapmap] |
| rs11231713 | 1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs11606081 | 0.88[YRI][hapmap] |
| rs1199046 | 0.88[YRI][hapmap] |
| rs12146487 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12421615 | 0.95[ASN][1000 genomes] |
| rs2096706 | 1.00[ASW][hapmap];0.89[JPT][hapmap] |
| rs2186572 | 0.81[CEU][hapmap];0.89[JPT][hapmap] |
| rs2286615 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs508168 | 0.88[YRI][hapmap] |
| rs516124 | 0.88[YRI][hapmap] |
| rs538147 | 0.88[YRI][hapmap] |
| rs57831436 | 0.88[EUR][1000 genomes] |
| rs58779949 | 0.88[EUR][1000 genomes] |
| rs602534 | 0.82[ASN][1000 genomes] |
| rs618160 | 0.82[ASN][1000 genomes] |
| rs645078 | 0.88[YRI][hapmap] |
| rs646384 | 1.00[ASW][hapmap] |
| rs660070 | 1.00[ASW][hapmap] |
| rs7123026 | 0.89[JPT][hapmap] |
| rs915987 | 1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs947939 | 1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPR137 | Proximal transcriptional regulation |
| MESDC2 | Distal transcriptional regulation |
| ENSG00000258947 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000257069 | Distal transcriptional regulation |
| CBLB | Distal transcriptional regulation |
| VCPIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014