SNP Report
Name | rs1199046   dbSNP |
---|---|
Location | chr:11,64118126 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10792430 | 1.00[YRI][hapmap] |
rs10897487 | 0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10897488 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11231757 | 0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs11231770 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11231771 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11231772 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11542299 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11601651 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11601860 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11606015 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11606081 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1199045 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1199047 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1662188 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1783521 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs17857342 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2510066 | 0.92[JPT][hapmap] |
rs3132740 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs474901 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs475032 | 0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs479552 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs479777 | 0.86[JPT][hapmap];0.81[AMR][1000 genomes] |
rs4930155 | 0.81[CEU][hapmap] |
rs499425 | 1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs508168 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs510372 | 0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs516124 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs519763 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs521950 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs527465 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs538147 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs542907 | 0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs566128 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs574087 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs574835 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs600377 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs612448 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs61886886 | 0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs61886926 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs627425 | 0.84[AMR][1000 genomes] |
rs645078 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs646153 | 0.85[AMR][1000 genomes] |
rs647152 | 0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs663743 | 1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs694739 | 1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs72926005 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs72926006 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs876064 | 0.88[YRI][hapmap] |
Symbol | Regulation type |
---|---|
CCDC88B | Proximal transcriptional regulation |
FERMT3 | Distal transcriptional regulation |
TRMT112 | Distal transcriptional regulation |
PRDX5 | Distal transcriptional regulation |
CCDC88B | Distal transcriptional regulation |
CCDC88B | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014