SNP Report
Basic Infomation
| Name | rs1199047 dbSNP |
|---|---|
| Location | chr:11,64118183 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897487 | 0.85[EUR][1000 genomes] |
| rs10897488 | 0.85[EUR][1000 genomes] |
| rs11231770 | 0.85[EUR][1000 genomes] |
| rs11231771 | 0.85[EUR][1000 genomes] |
| rs11231772 | 0.84[EUR][1000 genomes] |
| rs11542299 | 0.85[EUR][1000 genomes] |
| rs11601651 | 0.85[EUR][1000 genomes] |
| rs11601860 | 0.80[EUR][1000 genomes] |
| rs11606015 | 0.83[EUR][1000 genomes] |
| rs11606081 | 0.85[EUR][1000 genomes] |
| rs1199045 | 0.94[EUR][1000 genomes] |
| rs1199046 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1662188 | 0.86[EUR][1000 genomes] |
| rs17857342 | 0.85[EUR][1000 genomes] |
| rs2282548 | 0.81[AFR][1000 genomes] |
| rs3132740 | 0.87[EUR][1000 genomes] |
| rs475032 | 0.85[EUR][1000 genomes] |
| rs479552 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4930155 | 0.97[ASN][1000 genomes] |
| rs508168 | 0.86[EUR][1000 genomes] |
| rs510372 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs516124 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs538147 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs541207 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs566128 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs574835 | 0.81[EUR][1000 genomes] |
| rs615540 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs61886926 | 0.86[EUR][1000 genomes] |
| rs645078 | 0.86[EUR][1000 genomes] |
| rs647152 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72926005 | 0.87[EUR][1000 genomes] |
| rs72926006 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC88B | Proximal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| CCDC88B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CCDC88B | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014