SNP Report
Name | rs10897488   dbSNP |
---|---|
Location | chr:11,64140806 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10792430 | 1.00[YRI][hapmap] |
rs10897487 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11231770 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11231771 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11231772 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11542299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11601651 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11601860 | 0.82[AMR][1000 genomes] |
rs11606015 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11606081 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1199045 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1199046 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1199047 | 0.85[EUR][1000 genomes] |
rs1662188 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17857342 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2510066 | 0.87[ASW][hapmap];0.83[MEX][hapmap] |
rs3132740 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs474901 | 0.87[ASW][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs475032 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs479777 | 0.83[MEX][hapmap] |
rs4930155 | 0.86[GIH][hapmap];0.83[MEX][hapmap] |
rs499425 | 0.86[MEX][hapmap] |
rs508168 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs510372 | 0.98[GIH][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs516124 | 1.00[ASW][hapmap];0.87[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs519763 | 0.87[ASW][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs521950 | 0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs527465 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs538147 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs541207 | 0.89[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap] |
rs542907 | 0.80[AMR][1000 genomes] |
rs566128 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs574087 | 0.87[ASW][hapmap];0.87[MEX][hapmap] |
rs574835 | 0.83[AMR][1000 genomes] |
rs600377 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs612448 | 0.87[ASW][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes] |
rs61886926 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs645078 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs647152 | 0.83[GIH][hapmap];0.81[TSI][hapmap] |
rs663743 | 0.86[ASW][hapmap] |
rs694739 | 1.00[ASW][hapmap];0.83[MEX][hapmap] |
rs72926005 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs72926006 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs876064 | 0.88[YRI][hapmap] |
Symbol | Regulation type |
---|---|
HCFC1R1 | Distal transcriptional regulation |
THOC6 | Distal transcriptional regulation |
CCDC88B | Distal transcriptional regulation |
RPS6KA4 | Distal transcriptional regulation |
MIR1237 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014