SNP Report
Basic Infomation
| Name | rs541207 dbSNP |
|---|---|
| Location | chr:11,64125142 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897488 | 0.89[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap] |
| rs11606081 | 0.89[GIH][hapmap];0.80[TSI][hapmap] |
| rs1199047 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2282548 | 0.84[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs474901 | 0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4930155 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs508168 | 0.89[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap] |
| rs510372 | 0.86[GIH][hapmap];0.87[MEX][hapmap] |
| rs516124 | 0.89[GIH][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap] |
| rs519763 | 0.92[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs521950 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs527465 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs538147 | 0.89[GIH][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap] |
| rs542907 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs600377 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs612448 | 0.92[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs615540 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs645078 | 0.88[GIH][hapmap];0.82[MEX][hapmap] |
| rs647152 | 0.91[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPS6KA4 | Proximal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| ENSG00000237410 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| RASGRP2 | Distal transcriptional regulation |
| ENSG00000181908 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| ENSG00000256116 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014