SNP Report
Basic Infomation
| Name | rs474901 dbSNP |
|---|---|
| Location | chr:11,64125387 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897487 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10897488 | 0.87[ASW][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11231770 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11231771 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11231772 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11542299 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11601651 | 0.81[ASN][1000 genomes] |
| rs11606015 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11606081 | 0.87[ASW][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1199045 | 0.86[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1199046 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17857342 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2510066 | 0.83[MEX][hapmap] |
| rs475032 | 0.81[ASN][1000 genomes] |
| rs479777 | 0.83[MEX][hapmap] |
| rs4930155 | 0.92[CEU][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs499425 | 0.86[JPT][hapmap];0.86[MEX][hapmap] |
| rs508168 | 0.87[ASW][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs510372 | 0.93[GIH][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs516124 | 0.87[ASW][hapmap];0.81[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs519763 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs521950 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs527465 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs538147 | 0.87[ASW][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs541207 | 0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs542907 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs566128 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs574087 | 0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap] |
| rs600377 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs612448 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs615540 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61886926 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs645078 | 0.87[ASW][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs646153 | 0.80[AFR][1000 genomes] |
| rs663743 | 0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs694739 | 0.87[ASW][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs72926005 | 0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72926006 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs915987 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPS6KA4 | Proximal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| ENSG00000237410 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| RASGRP2 | Distal transcriptional regulation |
| ENSG00000181908 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| ENSG00000256116 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CCDC88B | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014