SNP Report

Basic Infomation

Name	rs694739 dbSNP
Location	chr:11,64097233
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897488	1.00[ASW][hapmap];0.83[MEX][hapmap]
rs11231757	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11601860	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11606081	1.00[ASW][hapmap]
rs1199045	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1199046	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1783521	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2510066	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs474901	0.87[ASW][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs479552	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs479777	0.84[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs499425	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs508168	1.00[ASW][hapmap];0.83[MEX][hapmap]
rs510372	0.83[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs516124	1.00[ASW][hapmap];0.87[MEX][hapmap]
rs519763	0.87[ASW][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs538147	1.00[ASW][hapmap];0.87[MEX][hapmap]
rs542907	0.85[AFR][1000 genomes]
rs566128	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs574087	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs574835	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs600377	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs612448	0.87[ASW][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs61886886	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs627425	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs645078	1.00[ASW][hapmap];0.83[MEX][hapmap]
rs646153	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs647152	0.81[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs663743	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs887314	0.80[AMR][1000 genomes]
rs915987	1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000236935	Proximal transcriptional regulation
FKBP2	Distal transcriptional regulation
PPP1R14B	Distal transcriptional regulation
ENSG00000256940	Distal transcriptional regulation
GPR137	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 13)

eQTL related gene	Source
CCDC88B	seeQTL
CCDC88	Pritchard
CCDC88B	Pritchard
SCGB2A2	SCAN
FKBP2	SCAN
CCDC88B	SCAN
CCS	SCAN
MALAT1	SCAN
C11orf68	SCAN
TAF6L	SCAN
FKBP2	SCAN
PPP1CA	SCAN
CCDC88B	GTEx