SNP Report
Basic Infomation
| Name | rs887314 dbSNP |
|---|---|
| Location | chr:11,64053157 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231757 | 0.81[AMR][1000 genomes] |
| rs11601860 | 0.81[AMR][1000 genomes] |
| rs1783521 | 0.81[AMR][1000 genomes] |
| rs2510066 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs479777 | 0.81[AMR][1000 genomes] |
| rs510372 | 0.80[AMR][1000 genomes] |
| rs574087 | 0.82[AMR][1000 genomes] |
| rs574835 | 0.83[AMR][1000 genomes] |
| rs61886886 | 0.82[AMR][1000 genomes] |
| rs627425 | 0.83[AMR][1000 genomes] |
| rs646153 | 0.84[AMR][1000 genomes] |
| rs663743 | 0.82[AMR][1000 genomes] |
| rs694739 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BAD | Proximal transcriptional regulation |
| GPR137 | Proximal transcriptional regulation |
| SMAD4 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| ENSG00000236935 | Distal transcriptional regulation |
| GPR137 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CCDC88B | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014