SNP Report
Basic Infomation
| Name | rs479777 dbSNP |
|---|---|
| Location | chr:11,64107477 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897488 | 0.83[MEX][hapmap] |
| rs11231757 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11601860 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1199046 | 0.86[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs1783521 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2510066 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs474901 | 0.83[MEX][hapmap] |
| rs479552 | 0.82[AMR][1000 genomes] |
| rs499425 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs508168 | 0.83[MEX][hapmap] |
| rs510372 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs516124 | 0.87[MEX][hapmap] |
| rs519763 | 0.86[JPT][hapmap];0.83[MEX][hapmap] |
| rs538147 | 0.87[MEX][hapmap] |
| rs566128 | 0.81[AMR][1000 genomes] |
| rs574087 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs574835 | 0.89[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs600377 | 0.85[JPT][hapmap] |
| rs612448 | 0.86[JPT][hapmap] |
| rs61886886 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs627425 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs645078 | 0.83[MEX][hapmap] |
| rs646153 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs647152 | 0.87[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs663743 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs694739 | 0.84[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs887314 | 0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC88B | Proximal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| ENSG00000236935 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 16)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014