SNP Report
Basic Infomation
| Name | rs646384 dbSNP |
|---|---|
| Location | chr:11,63875456 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1011219 | 0.83[GIH][hapmap];0.80[TSI][hapmap] |
| rs10897465 | 1.00[YRI][hapmap] |
| rs11231662 | 1.00[YRI][hapmap] |
| rs11231664 | 1.00[YRI][hapmap] |
| rs11231670 | 1.00[YRI][hapmap] |
| rs11231713 | 1.00[ASW][hapmap];0.82[CEU][hapmap];0.91[GIH][hapmap];0.80[TSI][hapmap] |
| rs11231726 | 0.80[TSI][hapmap] |
| rs11605797 | 1.00[YRI][hapmap] |
| rs12786124 | 1.00[YRI][hapmap] |
| rs12800703 | 1.00[YRI][hapmap] |
| rs2096706 | 1.00[ASW][hapmap];0.87[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap] |
| rs2186572 | 0.88[CEU][hapmap];1.00[YRI][hapmap] |
| rs492357 | 1.00[YRI][hapmap] |
| rs4980499 | 1.00[YRI][hapmap] |
| rs4980500 | 1.00[YRI][hapmap] |
| rs504060 | 1.00[YRI][hapmap] |
| rs509701 | 1.00[YRI][hapmap] |
| rs582692 | 0.82[ASN][1000 genomes] |
| rs617856 | 0.82[ASN][1000 genomes] |
| rs632603 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs641811 | 0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs647304 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs651359 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs660070 | 1.00[ASW][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs683996 | 0.83[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7103915 | 0.83[GIH][hapmap] |
| rs7123026 | 0.82[CEU][hapmap] |
| rs876064 | 1.00[ASW][hapmap] |
| rs915987 | 1.00[ASW][hapmap] |
| rs947939 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FLRT1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
| FLRT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014