SNP Report
Basic Infomation
| Name | rs12786124 dbSNP |
|---|---|
| Location | chr:11,63678508 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 59)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751001 | 0.88[EUR][1000 genomes] |
| rs10897456 | 0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10897459 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10897465 | 0.81[CEU][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap] |
| rs10897466 | 0.81[TSI][hapmap] |
| rs10897467 | 0.83[AMR][1000 genomes] |
| rs11231603 | 1.00[YRI][hapmap] |
| rs11231623 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11231628 | 1.00[CEU][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs11231637 | 0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs11231643 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11231646 | 0.81[GIH][hapmap];0.91[TSI][hapmap] |
| rs11231655 | 0.86[AMR][1000 genomes] |
| rs11231662 | 0.92[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs11231664 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs11231670 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs11231671 | 0.92[CEU][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap] |
| rs11605797 | 0.92[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap] |
| rs12417507 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12421757 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12792726 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12797540 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12798491 | 0.83[TSI][hapmap] |
| rs12800703 | 0.87[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs1486936 | 0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2129467 | 0.82[AMR][1000 genomes] |
| rs224173 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2318126 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3019785 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs320109 | 0.85[JPT][hapmap] |
| rs3740636 | 0.81[TSI][hapmap] |
| rs3740637 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3850943 | 0.88[EUR][1000 genomes] |
| rs4143327 | 0.90[ASN][1000 genomes] |
| rs449047 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs454474 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs481835 | 0.81[TSI][hapmap] |
| rs492357 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs4963433 | 0.88[EUR][1000 genomes] |
| rs4980499 | 0.92[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4980500 | 0.92[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4980501 | 0.82[AMR][1000 genomes] |
| rs4980512 | 0.81[TSI][hapmap] |
| rs4980517 | 0.82[AMR][1000 genomes] |
| rs4980530 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs504060 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs509701 | 0.88[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap] |
| rs61886128 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs646384 | 1.00[YRI][hapmap] |
| rs660070 | 1.00[YRI][hapmap] |
| rs7105288 | 0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs7112348 | 0.88[AMR][1000 genomes] |
| rs7121067 | 0.92[ASN][1000 genomes] |
| rs728919 | 0.81[TSI][hapmap] |
| rs7926608 | 0.83[AMR][1000 genomes] |
| rs7928919 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7936614 | 0.83[AMR][1000 genomes] |
| rs7939416 | 0.82[EUR][1000 genomes] |
| rs928948 | 1.00[CEU][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255651 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014