SNP Report
Basic Infomation
| Name | rs11231603 dbSNP |
|---|---|
| Location | chr:11,63605663 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897465 | 1.00[YRI][hapmap] |
| rs11231599 | 1.00[LWK][hapmap] |
| rs11231662 | 1.00[YRI][hapmap] |
| rs11231664 | 1.00[YRI][hapmap] |
| rs11231666 | 1.00[AFR][1000 genomes] |
| rs11231670 | 1.00[YRI][hapmap] |
| rs11605797 | 1.00[YRI][hapmap] |
| rs12786124 | 1.00[YRI][hapmap] |
| rs12800703 | 1.00[YRI][hapmap] |
| rs449047 | 1.00[YRI][hapmap] |
| rs454474 | 1.00[YRI][hapmap] |
| rs492357 | 1.00[YRI][hapmap] |
| rs4980499 | 1.00[YRI][hapmap] |
| rs4980500 | 1.00[YRI][hapmap] |
| rs504060 | 1.00[YRI][hapmap] |
| rs509701 | 1.00[YRI][hapmap] |
| rs72916390 | 1.00[AFR][1000 genomes] |
| rs72934177 | 1.00[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MARK2 | Proximal transcriptional regulation |
| ENSG00000256280 | Proximal transcriptional regulation |
| ENSG00000255651 | Distal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
| ENSG00000256280 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014